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icd2omop

Source: R/icd2omop.R
icd2omop.Rd

icd2omop

Usage

icd2omop(
  codes,
  source_wildcard = "x",
  dbms_wildcard = "%",
  translate_from = "ICD9CM",
  collect = TRUE,
  overwrite = TRUE,
  con = getOption("con.default.value"),
  cdm_schema = getOption("cdm_schema.default.value"),
  ...
)

Arguments

codes

vector of source codes with or without wildcards

source_wildcard

wildcard indicator in source codes. for example if code is R47.x, put "x"

dbms_wildcard

wildcard indicator for dbms LIKE function.

translate_from

source vocabulary, e.g., ICD9CM or ICD10CM. Make sure to enter the same way it is included in the concept table

collect

whether to execute the query. defaults to TRUE

overwrite

whether to overwrite the temp table created in the course of the query (#temp). defaults to TRUE

con

the connection object to the database. defaults to option "con.default.value"

cdm_schema

the schema containing the CDM. defaults to option "cdm_schema.default.value"

Value

a dataframe of the target and source codes, and the original codes with wildcard (`orig_code`). If collect = FALSE, a reference to the SQL query.