allofus 1.2.0
The
allofus
R package now has a peer-reviewed publication in the Journal of the American Medical Informatics Association (JAMIA) under the Special Issue: Focus Issue on Returning Value to Communities from the All of Us Research Program through Innovative Approaches for Data Use, Analysis, Dissemination, and Research Capacity Building. The citation is:Smith LH, Cavanaugh R (2024). “allofus: An R Package to Facilitate Use of the All of Us Researcher Workbench.” Journal of the American Medical Informatics Association, ocae198. doi:10.1093/jamia/ocae198.
preprint: https://doi.org/10.1101/2024.04.10.24305611
Fixed with
aou_sql()
andaou_atlas_cohort()
to clarify that a connection is necessary whencollect = FALSE
.updated documentation on installing
allofus
on the RStudio Workbench and reference to community workspacefixed links in vignettes
Updated DOI throughout documentation
allofus 1.1.0
added new features including creation of temporary tables using
aou_compute()
andaou_create_temp_table()
and a newaou_collect()
function which accomodates bit64 integers when needed.simplified
aou_observation_period()
function to look at earliest and latest clinical events rather than strictly implementing OHDSI conventions per expert adviceall functions with the option to collect data locally default to
collect = FALSE
minor big fixes, improved error messages, and improved documentation